• Characterization of color cross-talk of CCD detectors and its influence in multispectral quantitative phase imaging 

      Ahmad, Azeem; Kumar, Anand; Dubey, Vishesh Kumar; Butola, Ankit; Ahluwalia, Balpreet Singh; Mehta, Dalip Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-02-08)
      Multi-spectral quantitative phase imaging (QPI) is an emerging imaging modality for wavelength dependent studies of several biological and industrial specimens. Simultaneous multi-spectral QPI is generally performed with color CCD cameras. Here, we present a new approach for accurately measuring the color crosstalk of 2D area detectors, without needing prior information about camera specifications. ...
    • Chip-based multimodal super-resolution microscopy for histological investigations of cryopreserved tissue sections 

      Villegas, Luis; Dubey, Vishesh Kumar; Nystad, Mona; Tinguely, Jean-Claude; Coucheron, David Andre; Dullo, Firehun Tsige; Priyadarshi, Anish; Acuna Maldonado, Sebastian Andres; Ahmad, Azeem; Mateos, Jose M.; Barmettler, Gery; Ziegler, Urs; Birgisdottir, Åsa Birna; Hovd, Aud-Malin Karlsson; Fenton, Kristin Andreassen; Acharya, Ganesh; Agarwal, Krishna; Ahluwalia, Balpreet Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-02-24)
      Histology involves the observation of structural features in tissues using a microscope. While diffraction-limited optical microscopes are commonly used in histological investigations, their resolving capabilities are insufficient to visualize details at subcellular level. Although a novel set of super-resolution optical microscopy techniques can fulfill the resolution demands in such cases, the ...
    • Deep learning architecture “LightOCT” for diagnostic decision support using optical coherence tomography images of biological samples 

      Butola, Ankit; Prasad, Dilip Kumar; Ahmad, Azeem; Dubey, Vishesh Kumar; Qaiser, Darakhshan; Srivastava, Anurag; Senthilkumaran, Paramasivam; Ahluwalia, Balpreet Singh; Mehta, Dalip Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-08-13)
      Optical coherence tomography (OCT) is being increasingly adopted as a label-free and non-invasive technique for biomedical applications such as cancer and ocular disease diagnosis. Diagnostic information for these tissues is manifest in textural and geometric features of the OCT images, which are used by human expertise to interpret and triage. However, it suffers delays due to the long process of ...
    • Deriving high contrast fluorescence microscopy images through low contrast noisy image stacks 

      Acuna Maldonado, Sebastian Andres; ROY, MAYANK; Villegas, Luis; Dubey, Vishesh Kumar; Ahluwalia, Balpreet Singh; Agarwal, Krishna (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-08-11)
      Contrast in fluorescence microscopy images allows for the differentiation between different structures by their difference in intensities. However, factors such as point-spread function and noise may reduce it, affecting its interpretability. We identified that fluctuation of emitters in a stack of images can be exploited to achieve increased contrast when compared to the average and Richardson-Lucy ...
    • High space-bandwidth in quantitative phase imaging using partially spatially coherent digital holographic microscopy and a deep neural network 

      Butola, Ankit; Kanade, Sheetal Raosaheb; Bhatt, Sunil; Dubey, Vishesh Kumar; Kumar, Anand; Ahmad, Azeem; Prasad, Dilip K.; Senthilkumaran, Paramasivam; Ahluwalia, Balpreet Singh; Mehta, Dalip Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-16)
      Quantitative phase microscopy (QPM) is a label-free technique that enables monitoring of morphological changes at the subcellular level. The performance of the QPM system in terms of spatial sensitivity and resolution depends on the coherence properties of the light source and the numerical aperture (NA) of objective lenses. Here, we propose high space-bandwidth quantitative phase imaging using ...
    • Highly temporal stable, wavelength-independent, and scalable field-of-view common-path quantitative phase microscope 

      Ahmad, Azeem; Dubey, Vishesh Kumar; Butola, Ankit; Ahluwalia, Balpreet Singh; Mehta, Dalip Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-11-11)
      <p><i>Significance:</i> High temporal stability, wavelength independency, and scalable field of view (FOV) are the primary requirements of a quantitative phase microscopy (QPM) system. The high temporal stability of the system provides accurate measurement of minute membrane fluctuations of the biological cells that can be an indicator of disease diagnosis. <p><i>Aim:</i> The main aim of this work ...
    • Label-free imaging on waveguide platform with enhanced resolution and contrast 

      Jayakumar, Nikhil; Dullo, Firehun Tsige; Dubey, Vishesh Kumar; Ahmad, Azeem; Cauzzo, Jennifer; Mazagao Guerreiro, Eduarda; Snir, Omri; Skalko-Basnet, Natasa; Agarwal, Krishna; Ahluwalia, Balpreet Singh (Conference object; Konferansebidrag, 2021)
      Chip-based Evanescent Light Scattering (cELS) utilizes the multiple modes of a high-index contrast optical waveguide for near-field illumination of unlabeled samples, thereby repositioning the highest spatial frequencies of the sample into the far-field. The multiple modes scattering off the sample with different phase differences is engineered to have random spatial distributions within the integration ...
    • Lulworthinone: In Vitro Mode of Action Investigation of an Antibacterial Dimeric Naphthopyrone Isolated from a Marine Fungus 

      Juskewitz, Eric; Mishchenko, Ekaterina; Dubey, Vishesh Kumar; Jenssen, Marte; Jakubec, Martin; Rainsford, Philip; Isaksson, Johan Mattias; Andersen, Jeanette Hammer; Ericson, Johanna U (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-04-21)
      Treatment options for infections caused by antimicrobial-resistant bacteria are rendered ineffective, and drug alternatives are needed—either from new chemical classes or drugs with new modes of action. Historically, natural products have been important contributors to drug discovery. In a recent study, the dimeric naphthopyrone lulworthinone produced by an obligate marine fungus in the family ...
    • Multi-moded high-index contrast optical waveguide for super-contrast high-resolution label-free microscopy 

      Jayakumar, Nikhil; Dullo, Firehun Tsige; Dubey, Vishesh Kumar; Ahmad, Azeem; Ströhl, Florian; Cauzzo, Jennifer; Mazagao Guerreiro, Eduarda; Snir, Omri; Skalko-Basnet, Natasa; Agarwal, Krishna; Ahluwalia, Balpreet Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-06-20)
      The article elucidates the physical mechanism behind the generation of superior-contrast and highresolution label-free images using an optical waveguide. Imaging is realized by employing a high index contrast multi-moded waveguide as a partially coherent light source. The modes provide near-field illumination of unlabeled samples, thereby repositioning the higher spatial frequencies of the ...
    • Partially spatially coherent digital holographic microscopy and machine learning for quantitative analysis of human spermatozoa under oxidative stress condition 

      Dubey, Vishesh Kumar; Popova, Daria; Ahmad, Azeem; Acharya, Ganesh; Basnet, Purusotam; Mehta, Dalip Singh; Ahluwalia, Balpreet Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-03-05)
      Semen quality assessed by sperm count and sperm cell characteristics such as morphology and motility, is considered to be the main determinant of men’s reproductive health. Therefore, sperm cell selection is vital in assisted reproductive technology (ART) used for the treatment of infertility. Conventional bright field optical microscopy is widely utilized for the imaging and selection of sperm cells ...
    • Photonic-chip: a multimodal imaging tool for histopathology 

      Villegas, Luis; Dubey, Vishesh Kumar; Tinguely, Jean-Claude; Coucheron, David Andre; Priyadarshi, Anish; Acuña Maldonado, Sebastian Andres; Agarwal, Krishna; Mateos, Jose M; Nystad, Mona; Hovd, Aud-Malin Karlsson; Fenton, Kristin Andreassen; Ahluwalia, Balpreet Singh (Conference object; Konferansebidrag, 2021-04)
      We propose the photonic-chip as a multimodal imaging platform for histopathological assessment, allowing large fields-of-view across diverse microscopy methods including total internal reflection fluorescence and single-molecule localization.
    • Relationship between the source size at the diffuser plane and the longitudinal spatial coherence function of the optical coherence microscopy system 

      Usmani, Kashif; Ahmad, Azeem; Joshi, Rakesh; Dubey, Vishesh Kumar; Butola, Ankit; Mehta, Dalip Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-11-25)
      Coherence properties of light sources are indispensable for optical coherence microscopy/tomography as they greatly influence the signal-to-noise ratio, axial resolution, and penetration depth of the system. In the present paper, we report the investigation of longitudinal spatial coherence properties of a pseudothermal light source (PTS) as a function of the laser spot size at the rotating diffuser ...
    • Sub-nanometer height sensitivity by phase shifting interference microscopy under environmental fluctuations 

      Ahmad, Azeem; Dubey, Vishesh Kumar; Butola, Ankit; Tinguely, Jean-Claude; Ahluwalia, Balpreet Singh; Mehta, Dalip Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-03-18)
      Phase shifting interferometric (PSI) techniques are among the most sensitive phase measurement methods. Owing to its high sensitivity, any minute phase change caused due to environmental instability results into, inaccurate phase measurement. Consequently, a well calibrated piezo electric transducer (PZT) and highly-stable environment is mandatory for measuring accurate phase map using PSI implementation. ...
    • Synthetic wavelength scanning interferometry for 3D surface profilometry with extended range of height measurement using multi-colour LED light sources 

      Mann, Priyanka; Dubey, Vishesh Kumar; Ahmad, Azeem; Butola, Ankit; Mehta, Dalip Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-04-05)
      We report three-dimensional surface profilometry with extended range of height measurements using synthetic wavelength scanning interferometry without tunable filters, wavelength-tuning lasers, grating elements. We have used inexpensive multiple colour light emitting diodes (LEDs) and operate them sequentially one by one or combination of two or more colours simultaneously to visualize synthetic ...
    • A transparent waveguide chip for versatile total internal reflection fluorescence-based microscopy and nanoscopy 

      Priyadarshi, Anish; Wolfson, Deanna; Ahmad, Azeem; Jayakumar, Nikhil; Dubey, Vishesh Kumar; Tinguely, Jean-Claude; Ahluwalia, Balpreet Singh; Murugan, Ganapathy Senthil (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-08-20)
      Total internal reflection fluorescence (TIRF) microscopy is an imaging technique that, in comparison to confocal microscopy, does not require a trade-off between resolution, speed, and photodamage. Here, we introduce a waveguide platform for chip-based TIRF imaging based on a transparent substrate, which is fully compatible with sample handling and imaging procedures commonly used with a standard ...
    • Unbalanced low coherence interference microscopy 

      Ahmad, Azeem; Habib, Anowarul; Dubey, Vishesh Kumar; Ahluwalia, Balpreet Singh (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-01-03)
      Low coherence interference microscopy (LCIM) provides high spatial phase sensitivity, i.e., speckle free and coherent noise free quantitative phase images of the test specimens. Due to low temporal coherence (TC) length of the light source, LCIM requires precise adjustment of the optical path difference (OPD) between the object and the reference arm, which is only a few micrometers. Consequently, ...